PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15491.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 427aa MW: 49350 Da PI: 5.8396

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	173	219	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l PHU15491.1 173 KGQWTIEEDRLLIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 219 799**************************9.***********97 PP
2	Myb_DNA-binding	54.8	2.2e-17	226	267	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ PHU15491.1 226 DFWTEEEDRILIEAHGEVGNK-WAEIAKKLP-GRTENSIKNHWN 267 67*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MELDQSNNQN LSIHQPFFMP NNNILKPEID DDFCIDSKDY YLKDFEHLDL NFSNTTFNNF 60 SQNFMIDDDT NGTTYHDPFD PFSNIEDNFS SLGDFNFSSH ELTPFDQENG ESGGSKVMKN 120 NFHDDEFMKP NLNFVNVPDD QSSCVTGDNN LSSSIKKKLG GRGRSKKSSK SSKGQWTIEE 180 DRLLIHLVEK FGIRKWSQIA QMLKGRIGKQ CRERWHNHLR PDIKKDFWTE EEDRILIEAH 240 GEVGNKWAEI AKKLPGRTEN SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE 300 KGSTKKDTNP NGRMEYTGSV AENRNENLAN RPKRHANIAK VKVSPKLEAI EFCQDNNAGD 360 FDLSEVPEFA LGDNFFDENK SMDAFMEEIN PNVGTSIMPC NYEMPTLMMQ GEVNKEIDLI 420 EMISRVN

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MELDQSNNQN LSIHQPFFMP NNNILKPEID DDFCIDSKDY YLKDFEHLDL NFSNTTFNNF  60
SQNFMIDDDT NGTTYHDPFD PFSNIEDNFS SLGDFNFSSH ELTPFDQENG ESGGSKVMKN  120
NFHDDEFMKP NLNFVNVPDD QSSCVTGDNN LSSSIKKKLG GRGRSKKSSK SSKGQWTIEE  180
DRLLIHLVEK FGIRKWSQIA QMLKGRIGKQ CRERWHNHLR PDIKKDFWTE EEDRILIEAH  240
GEVGNKWAEI AKKLPGRTEN SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE  300
KGSTKKDTNP NGRMEYTGSV AENRNENLAN RPKRHANIAK VKVSPKLEAI EFCQDNNAGD  360
FDLSEVPEFA LGDNFFDENK SMDAFMEEIN PNVGTSIMPC NYEMPTLMMQ GEVNKEIDLI  420
EMISRVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-71	MYB family protein