PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU15556.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 210aa    MW: 22167 Da    PI: 4.5037
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU15556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC81.69.1e-264196153
       NF-YC  1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53
                ql++fw++q   ie+atdfknh+lPl rikki+kad+dv+m+sae+Pvl++kace+
  PHU15556.1 41 QLQMFWNYQrqeIEQATDFKNHQLPLGRIKKIMKADKDVRMMSAETPVLFAKACEM 96
                89*****998899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MDNNNDNTHQ SPTEASAAAA AAAAQSAAYP PETPYHVLQQ QLQMFWNYQR QEIEQATDFK  60
NHQLPLGRIK KIMKADKDVR MMSAETPVLF AKACEMDEVK DEGVGLGLAP GGVPCYYPPL  120
GQPDPGGVML GRPAVPAGVV PGAVPGVVPG TVPGTVPGVV PGAVPGVDPS MYVLHLPFQV  180
WQSMWQISED HSYPSGGGSS SGQGTDDSQM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-30NF-YC family protein