PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15557.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 184aa MW: 19930 Da PI: 4.6838

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	119.8	1.2e-37	1	73	30	102
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +kadedv+misae+Pvl+ kace+fi eltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prde+k PHU15557.1 1 MKADEDVRMISAETPVLFGKACEMFIQELTLRSWIHSEENKRRTLQKNDIAAAISRTDTFDFLVDIIPRDEVK 73 9*********************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MKADEDVRMI SAETPVLFGK ACEMFIQELT LRSWIHSEEN KRRTLQKNDI AAAISRTDTF 60 DFLVDIIPRD EVKDEGVGLR LAPGGVPYYY PPLGQPAPGG VMLGRPAVPA GVVPGDVPGV 120 VPGTVPGTVP GVVPGAVPGV DPSMYVPHLP FQVWQSMWQT SEDHLYPVEV EVAVDRVPMT 180 AKCK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	48	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	6e-46	NF-YC family protein