PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU15589.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 734aa    MW: 80965.5 Da    PI: 6.671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU15589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-193081556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++t++q++ Le++F+++++p++++r +L++ lgL  rq+k+WFqNrR++ k
  PHU15589.1 30 HRHTAHQIQSLEAVFKECPHPDEKTRLQLSRDLGLAPRQIKFWFQNRRTQLK 81
                689*********************************************9987 PP
2START167.59.1e-532224472206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a  a++el+++ + +ep+W+ks       +n d++ q+f+++++       ++ea+r+sgvv+m+   lv  ++d++ +W e ++    ka tlevis
  PHU15589.1 222 IAGNAMEELIRLLQTNEPLWTKSTtdgrHVLNVDTYDQIFPKANSslknpnVRVEASRESGVVIMNGLALVDMFIDVN-KWAEFFPtivsKAGTLEVIS 319
                 67899********************99999***********9999*********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                  g      ++lqlm+ e q+lsplvp R  +f+R+++q + g+w+ivdvS d +q++   +s+ ++++lpSg+li++++ng+skvtw+ehv+++++   
  PHU15589.1 320 CGimdsrsSTLQLMYEEQQVLSPLVPtRHLYFLRFCQQIEPGSWAIVDVSYDITQENLYPPSSCKVHKLPSGCLIQDMPNGYSKVTWLEHVEVEEKGSi 418
                 ********************************************************97799********************************998666 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h l+r l++sg+a+ga +w+  lqr ce+
  PHU15589.1 419 HRLYRDLIHSGMAFGAERWLGSLQRMCER 447
                 ***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MEYGSTGGGA ASSSGGGDAA DAQRKKKRFH RHTAHQIQSL EAVFKECPHP DEKTRLQLSR  60
DLGLAPRQIK FWFQNRRTQL KSQHERADNS ALRSENDRIR CENIAMREAI KNVICPSCGG  120
PPVEHTYFDD QKLRMENLQL KEELDKISSI AAKYMGRPIA QLPPVQPVHL SSLNLMSMSN  180
FGLPGPSLDL DLLPGSSTST VPSLTFPTLN ISDMDKSLMA DIAGNAMEEL IRLLQTNEPL  240
WTKSTTDGRH VLNVDTYDQI FPKANSSLKN PNVRVEASRE SGVVIMNGLA LVDMFIDVNK  300
WAEFFPTIVS KAGTLEVISC GIMDSRSSTL QLMYEEQQVL SPLVPTRHLY FLRFCQQIEP  360
GSWAIVDVSY DITQENLYPP SSCKVHKLPS GCLIQDMPNG YSKVTWLEHV EVEEKGSIHR  420
LYRDLIHSGM AFGAERWLGS LQRMCERYAC LMVSGNSSRE LGGVIPSPEG KKSMMKVSQR  480
MVSSFCASIN PSNGHQWNNI STTNEFEVRA TLQKCTDPGQ PNGVVISAAS TIWLPVPPQH  540
VFNFLRDERT RSQWDVLSNQ NPVQEVAHIA NGSHPGNSIS VLRAYNTSQN NMLILQESCI  600
DSSGSLVVYS PVDLQSINIA MSGEDTTYIP LLPSGFTILR DGRHDGGSNE ASMNNNNDTM  660
GEHNRTGGGR GGGSLVTVAF QILVSSLSSS AKMSPESVNT VNNLIGNTIH QIKAALNCSN  720
FEFNSAAALN TEYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein