PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16311.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 629aa MW: 71459.3 Da PI: 6.1228

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.9	6.1e-21	493	589	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +kvl++sdv+++gr+vlpk+ ae+h ++++ ++ + +ed ++r+W++k+++ ++ks++y+l+ ++ +FvkangL+egDf+v++ + +++++++ PHU16311.1 493 QKVLKQSDVNNLGRIVLPKREAERHlpHLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYA--DmKCGKYLI 588 79***********************999999****7778***99777777777777.******************5..448887776 PP E CS B3 95 k 95 + PHU16311.1 589 R 589 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MDRKLHELHG NTNNQDENIN MVQSADDDIQ MLQQQPTDFD PMEDTDIWLN ENFSTDFTSL 60 QDFPCMSSSS STSYSPPTEL SDPSSGVVLK SDAEQDFDKK IDTIGDQECL NVMENLEYMD 120 LIDVNEFLDP MISFLHSENQ NPQEQQQQEL VVKEKGKVPL EDDQQVSIFQ GDSELALMFF 180 EWLKHNKDYI SAEDMRSIKL KRSTIESASR RLGSNKEGKK QLLRLILDWV EQHRLQKKQM 240 TEAQAINQQC LQNCAPCNFD PNACFFPPQW IANPAYNAPF PEPMQGYIGD AYCNGSYFAT 300 PLNHTVNGGV SSPLSAEYQP MDTSQSWSPS QFTMATASQY NQFPENDGTN NVAMADQSQS 360 LLSTQYDPYQ IFDGNGEALP RLGSCATREA RKNRMARQRR VRPHHYRHQN RNQRQISNEK 420 SVMMGGEINN CAMTQANNPG NWVCWPSPPM VMVPQPLPLE RPAVQPPQSH QKNGSADKKQ 480 AIKTEKNLKF LLQKVLKQSD VNNLGRIVLP KREAERHLPH LETRDGISIA MEDIGTSRVW 540 NMKYRFWPNN KSRMYLLENT GDFVKANGLQ EGDFIVIYAD MKCGKYLIRG VKVRPNGPKL 600 EGKKQAKKNL RKLSSAAAIS SSPVAQAVR

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MDRKLHELHG NTNNQDENIN MVQSADDDIQ MLQQQPTDFD PMEDTDIWLN ENFSTDFTSL  60
QDFPCMSSSS STSYSPPTEL SDPSSGVVLK SDAEQDFDKK IDTIGDQECL NVMENLEYMD  120
LIDVNEFLDP MISFLHSENQ NPQEQQQQEL VVKEKGKVPL EDDQQVSIFQ GDSELALMFF  180
EWLKHNKDYI SAEDMRSIKL KRSTIESASR RLGSNKEGKK QLLRLILDWV EQHRLQKKQM  240
TEAQAINQQC LQNCAPCNFD PNACFFPPQW IANPAYNAPF PEPMQGYIGD AYCNGSYFAT  300
PLNHTVNGGV SSPLSAEYQP MDTSQSWSPS QFTMATASQY NQFPENDGTN NVAMADQSQS  360
LLSTQYDPYQ IFDGNGEALP RLGSCATREA RKNRMARQRR VRPHHYRHQN RNQRQISNEK  420
SVMMGGEINN CAMTQANNPG NWVCWPSPPM VMVPQPLPLE RPAVQPPQSH QKNGSADKKQ  480
AIKTEKNLKF LLQKVLKQSD VNNLGRIVLP KREAERHLPH LETRDGISIA MEDIGTSRVW  540
NMKYRFWPNN KSRMYLLENT GDFVKANGLQ EGDFIVIYAD MKCGKYLIRG VKVRPNGPKL  600
EGKKQAKKNL RKLSSAAAIS SSPVAQAVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-115	B3 family protein