PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16336.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 306aa    MW: 35603.2 Da    PI: 5.9719
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix591.2e-1826108286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  PHU16336.1  26 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSSTQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 108
                 ***********************************9966667766579*****************98766664......3588888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
LFLPPPDSTQ PQISPSPQKK TQPIPWTHQE TFNLIQAYQE KWYSLKKGQL KASQWEEVAI  60
TVAARCGFDE PSKSSTQCRH KIEKLRKRYR AERLKPYPNS WQYFDLMDSM ERGPLPIAAH  120
PVAMVECNTD NHQRYYDTDS DEVDVSYMDL RKNKSKNINH IVRNGGVMGV NGNVNRMVKD  180
RNFDDVMRGM MRNSMNVDKR KGYFGKVGIN EDEDDVEEEV DEEEDEEDGD GSVGGSELAA  240
EIRGFAERFM RMESKKIEMM KETERYRMEM EKRRMEMILE TQRSLIDTIN SVVGGSHKKV  300
KVAHEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-32Trihelix family protein