PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16388.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 205aa    MW: 22322.8 Da    PI: 6.9982
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-38151161101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+ dC++apyf +e+ p+kfa++hk+FGasnv+kll+++p ++r da+ +++yeA+ar++dPvyG+v+ i++lqqq++ l++++ ++k
  PHU16388.1  15 PCGACKFLRRKCVVDCIFAPYFNSEEgPSKFAAIHKVFGASNVSKLLHNVPVDDRCDAVVTIAYEAQARIKDPVYGCVANIFALQQQVAYLQSQVMQVK 113
                 7*********************998889*******************************************************************9999 PP

      DUF260  99 eel 101
                 ++l
  PHU16388.1 114 AQL 116
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MASSSSSVTG GTGSPCGACK FLRRKCVVDC IFAPYFNSEE GPSKFAAIHK VFGASNVSKL  60
LHNVPVDDRC DAVVTIAYEA QARIKDPVYG CVANIFALQQ QVAYLQSQVM QVKAQLAQTL  120
INNSNNSYNP QWIINNNNNN VASSGQMTTS SSFPANYPNY YINAKSNSSP QSSSMESADH  180
YSDGHGMSMQ DIHSLDQFLY QPYTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.19e-62LBD family protein