PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16394.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 451aa MW: 49907.6 Da PI: 7.8219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	305	351	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PHU16394.1 305 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 351 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MIPGVLCHCS PSRFGFMGDL GVQQVLCKIV EGSDWTYAIY WQVAKSKSGK SALIWGDGHC 60 REAKMGQSEG GSDSAHQKMM DGNKKKMVLQ KIHTCFGGSD DDNIAAKLDS VSDVEVFYLT 120 SMYYIFPFDK PSSPSQSFNS ARSIWVSDYK GCSEHFQSRS YLAKLARFET LVFVPLKSGV 180 VELGSVKSIP EDQNLIQMVK ASVVVSNPPQ PKAIPKIFGR ELSLGGAKSG PISINFSPKM 240 EDDLSFASDS YEVQAALGSS QVYGNSSNGY RSDEGEGKLY KEELDDRKPR KRGRKPANGR 300 EEALNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIAYITDL QARIRVLDAE 360 KEMVSDKQKQ QVIPEIDFHQ RQDDAVVRVG CPLNAHPVST VLKTFQEHQL VPLESNVSLT 420 ENSELVHTFS IRAPGSAAED LKEKLTAALA K

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MIPGVLCHCS PSRFGFMGDL GVQQVLCKIV EGSDWTYAIY WQVAKSKSGK SALIWGDGHC  60
REAKMGQSEG GSDSAHQKMM DGNKKKMVLQ KIHTCFGGSD DDNIAAKLDS VSDVEVFYLT  120
SMYYIFPFDK PSSPSQSFNS ARSIWVSDYK GCSEHFQSRS YLAKLARFET LVFVPLKSGV  180
VELGSVKSIP EDQNLIQMVK ASVVVSNPPQ PKAIPKIFGR ELSLGGAKSG PISINFSPKM  240
EDDLSFASDS YEVQAALGSS QVYGNSSNGY RSDEGEGKLY KEELDDRKPR KRGRKPANGR  300
EEALNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIAYITDL QARIRVLDAE  360
KEMVSDKQKQ QVIPEIDFHQ RQDDAVVRVG CPLNAHPVST VLKTFQEHQL VPLESNVSLT  420
ENSELVHTFS IRAPGSAAED LKEKLTAALA K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	295	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-138	bHLH family protein