PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16580.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 855aa MW: 94318.2 Da PI: 8.9093

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4.3e-20	763	843	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++Li++r e++++++ +++++lWee+s+ + g+ersp qCk+ w +l ++y++ k+ +k+ ++++pyf++l+ PHU16580.1 763 KWKHDEIQKLIALRGELHSKFQVVRRRMALWEEISSSFLSIGVERSPAQCKSLWASLVQKYEENKRDKKS-----QEKWPYFEELN 843 7**********************************************************999998887.....578****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence
MAAAFSSAIS LCPYKLCHRL NPRNRYISCC TPSSSSSSSI GVHGSKGPRK RPGKMEGAGR 60 SIDDSVQRRM EQFYEGPDGP PLRVLPIGGL GEIGMNCMLV GNYDRYILID AGIMFPGYDE 120 PGVQKIIPDT TFIKKWSHKI EAVVITHGHE DHIGALPWVI PALDSHTPIF ASSFTMELIK 180 KRLKEFGIFV PSRLKVFKTR RKFTAGPFEV EPITVTHSIP DCSGIVLRCA DGTILHTGDW 240 KIDESPLDGK VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAAKG 300 RVITTQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLLKVED 360 IDAYAPKDLL IVTTGSQAEP RAALNLASYG SSHSLKLNKE DLVLYSAKVI PGNDTRVMQM 420 LNRISDIGST IVMGKNELLH TSGHAHREEL EEVLRIVKPQ HFLPVHGELL FLKEHELLGK 480 STGIQHTAVI KNGEMLGISH LRNRKVLSNG FTSLGKEKLQ LMYSDGDKAF GTAAELCIDE 540 RLRISSDGII VVSMEILRPQ STDGMTEKAL KGKIRITTRC LWLDKGKLLD GLHKAAHAAL 600 SSCPLSSPLS HMERTVSEVL RKLVRKYSSK RPEVIAIAFE NPAGVLADEI YGKLSGKSHV 660 GFGISAPRNV LDKDQKRRQE SGACAEEGNG HVHPIDAAEQ VKGDDMDIER LTHDGATTSS 720 SNSPDEYSTT EGGSELSRKE SIQIDSGSPQ TMVKTSKPSK RNKWKHDEIQ KLIALRGELH 780 SKFQVVRRRM ALWEEISSSF LSIGVERSPA QCKSLWASLV QKYEENKRDK KSQEKWPYFE 840 ELNRILSGLE ATAQK

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence

MAAAFSSAIS LCPYKLCHRL NPRNRYISCC TPSSSSSSSI GVHGSKGPRK RPGKMEGAGR  60
SIDDSVQRRM EQFYEGPDGP PLRVLPIGGL GEIGMNCMLV GNYDRYILID AGIMFPGYDE  120
PGVQKIIPDT TFIKKWSHKI EAVVITHGHE DHIGALPWVI PALDSHTPIF ASSFTMELIK  180
KRLKEFGIFV PSRLKVFKTR RKFTAGPFEV EPITVTHSIP DCSGIVLRCA DGTILHTGDW  240
KIDESPLDGK VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAAKG  300
RVITTQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLLKVED  360
IDAYAPKDLL IVTTGSQAEP RAALNLASYG SSHSLKLNKE DLVLYSAKVI PGNDTRVMQM  420
LNRISDIGST IVMGKNELLH TSGHAHREEL EEVLRIVKPQ HFLPVHGELL FLKEHELLGK  480
STGIQHTAVI KNGEMLGISH LRNRKVLSNG FTSLGKEKLQ LMYSDGDKAF GTAAELCIDE  540
RLRISSDGII VVSMEILRPQ STDGMTEKAL KGKIRITTRC LWLDKGKLLD GLHKAAHAAL  600
SSCPLSSPLS HMERTVSEVL RKLVRKYSSK RPEVIAIAFE NPAGVLADEI YGKLSGKSHV  660
GFGISAPRNV LDKDQKRRQE SGACAEEGNG HVHPIDAAEQ VKGDDMDIER LTHDGATTSS  720
SNSPDEYSTT EGGSELSRKE SIQIDSGSPQ TMVKTSKPSK RNKWKHDEIQ KLIALRGELH  780
SKFQVVRRRM ALWEEISSSF LSIGVERSPA QCKSLWASLV QKYEENKRDK KSQEKWPYFE  840
ELNRILSGLE ATAQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	672	678	DKDQKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein