PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16607.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 375aa MW: 39181.2 Da PI: 6.7534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	179	224	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq PHU16607.1 179 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 224 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEAMNSSSFH SSGENGGSST EHDDFLQQIL SSVPSSSSPW PDIGDAHPYN FDNDHHHHNS 60 SLLASKLRQQ QINGKALMLQ QQQLLMSRGL TGDQNDDALN QGNEISVQAL YNGFAGSLGQ 120 TSNQSQHFHH SQTQSFGAPA SLTTNQTPAV SGGSAGGGGG AQPKQQKIRA RRGQATDPHS 180 IAERLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV RFLQLQVKVL SMSRLGGAAA 240 VAPLVADRSS EGGGDCVQAN VARGISNGTT SSTNNDNTMT MTEHQVAKLM EEDMGSAMQY 300 LQGKGLCLMP ISLASAISTA TCHSMKPNNH SLLLGRGGGG GGVVNGGGGE NGGGPSSPTL 360 SASTVQSATM GNGGT

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEAMNSSSFH SSGENGGSST EHDDFLQQIL SSVPSSSSPW PDIGDAHPYN FDNDHHHHNS  60
SLLASKLRQQ QINGKALMLQ QQQLLMSRGL TGDQNDDALN QGNEISVQAL YNGFAGSLGQ  120
TSNQSQHFHH SQTQSFGAPA SLTTNQTPAV SGGSAGGGGG AQPKQQKIRA RRGQATDPHS  180
IAERLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV RFLQLQVKVL SMSRLGGAAA  240
VAPLVADRSS EGGGDCVQAN VARGISNGTT SSTNNDNTMT MTEHQVAKLM EEDMGSAMQY  300
LQGKGLCLMP ISLASAISTA TCHSMKPNNH SLLLGRGGGG GGVVNGGGGE NGGGPSSPTL  360
SASTVQSATM GNGGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-57	bHLH family protein