PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16820.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YB

Protein Properties

Length: 238aa MW: 26605.6 Da PI: 6.2203

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.7	1.4e-52	64	158	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrf+Pianv+rim+k+lP +akis+d+ket+qecvsefisfvt+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl+++l++yre+++ PHU16820.1 64 VREQDRFMPIANVIRIMRKILPPHAKISDDSKETIQECVSEFISFVTGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLHLHRYRECDS 158 69******************************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MDLGGGKGGG GFHGYHRFPP TTSDGKVTEM NMNLSAQLNH AIPPTNHNNN NNHASVTDDS 60 ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDSKETIQE CVSEFISFVT GEANDRCQRE 120 QRKTITAEDV LWAMSKLGFD DYIEPLTLHL HRYRECDSGD RGSLRGEPLM LMKPRGVVVD 180 PAASTSINAN MIPINYPLPP NFTMAHHHHG YFTYAHMSHD NVASNSQANH DEANNVEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	11	GGGKGGGG
2	5	12	GGGKGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	1e-66	NF-YB family protein