PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17030.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1155aa MW: 128146 Da PI: 4.6576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PHU17030.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33.9	7.4e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l PHU17030.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1155 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR 120 KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR RRSKLNLPAP 300 QIPDHELEAI AKIGIASDLI GGDELSEGNS ATRALLANYA QTPQHAMTPM RTPQRTPSTK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT 420 GLTPRIGMTP SRDSYGMTPK GTPRDELRIN EEMDNNAKFG QFNSKKELLS GLRGLPQPKN 480 EYQIVVQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARQQ ALLRKRSKVL QRELPRPPIT 540 SLDLIRRSLM RSDEDKSSFV PFTLIEQADE MIRKELVSLL EHDNTKYPLD EKAEKEKKKG 600 VKRKAVAEPA IEDFEEDELK EADELIKDEA QFLRVAMGHE NESLDDFVQA HETTLNDIMY 660 FPTRNAYGLS SVAGNMEKLA ALQNEFENVK KKMDDDTKKA TKLEQKIKVL TNGYQMRAGK 720 LWSEIESTFK KMDTAGTELE CFRALQKQEQ LAATHRINNM WEEVQKQKEF ERTLQKRYGD 780 LVAEKQKIQQ LMDGHRIQAQ IQEEIAAKNR ALELAKAEMA EKDRALELAK AEMAEKESAL 840 ELAKAELAEK ESVPSAGDVE PSGTGQCSNT EEISASASHV PIEADVHVEP SGTGQYSNPE 900 ENHASASDVQ SAPIEADYVP VEPSGTSNAE ENSASIEDDY VLVEPSATSN AVENSASIEA 960 DDVHVEPSGS GQCPIAEETS ASVSHDVAPL DVEGQVKTGR VSAMDVEATS DHVPMEGQQN 1020 LVEESNMDVT KTEDSGAVAG DADVPKTEDS GLVAGDTDVF KTEDSGVAAG DADVPKTENS 1080 GAVAGDADVP KTEDSGLVAG DMDVFKTEDS GVAAGDADVP KTEDSRVVAG DADVPKTEDS 1140 GVVVTCDGEA NAGKL

Sequence ? help Back to Top

Protein Sequence Length: 1155 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR  120
KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR RRSKLNLPAP  300
QIPDHELEAI AKIGIASDLI GGDELSEGNS ATRALLANYA QTPQHAMTPM RTPQRTPSTK  360
QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT  420
GLTPRIGMTP SRDSYGMTPK GTPRDELRIN EEMDNNAKFG QFNSKKELLS GLRGLPQPKN  480
EYQIVVQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARQQ ALLRKRSKVL QRELPRPPIT  540
SLDLIRRSLM RSDEDKSSFV PFTLIEQADE MIRKELVSLL EHDNTKYPLD EKAEKEKKKG  600
VKRKAVAEPA IEDFEEDELK EADELIKDEA QFLRVAMGHE NESLDDFVQA HETTLNDIMY  660
FPTRNAYGLS SVAGNMEKLA ALQNEFENVK KKMDDDTKKA TKLEQKIKVL TNGYQMRAGK  720
LWSEIESTFK KMDTAGTELE CFRALQKQEQ LAATHRINNM WEEVQKQKEF ERTLQKRYGD  780
LVAEKQKIQQ LMDGHRIQAQ IQEEIAAKNR ALELAKAEMA EKDRALELAK AEMAEKESAL  840
ELAKAELAEK ESVPSAGDVE PSGTGQCSNT EEISASASHV PIEADVHVEP SGTGQYSNPE  900
ENHASASDVQ SAPIEADYVP VEPSGTSNAE ENSASIEDDY VLVEPSATSN AVENSASIEA  960
DDVHVEPSGS GQCPIAEETS ASVSHDVAPL DVEGQVKTGR VSAMDVEATS DHVPMEGQQN  1020
LVEESNMDVT KTEDSGAVAG DADVPKTEDS GLVAGDTDVF KTEDSGVAAG DADVPKTENS  1080
GAVAGDADVP KTEDSGLVAG DMDVFKTEDS GVAAGDADVP KTEDSRVVAG DADVPKTEDS  1140
GVVVTCDGEA NAGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRQRKRKRR
2	199	205	QRKRKRR
3	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein