PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17272.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 316aa    MW: 34139.1 Da    PI: 8.5778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-091153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d  + +a + ++ +   +W++Ia  +  g+tl+++k+++
       PHU17272.1 11 WSREQDIAFENALATYPEDsadRWEKIAGDVS-GKTLEEVKNHY 53
                     ********************************.**********9 PP
2Myb_DNA-binding44.34.2e-14121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
       PHU17272.1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MTLAKSRSSI WSREQDIAFE NALATYPEDS ADRWEKIAGD VSGKTLEEVK NHYEILVDDV  60
SRIESGCVPL PCYNSSVDGS SSHGGGERTG KKSGISGRLN GETNDGGKAL RLEQDRRKGV  120
AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRTS  180
IHDITSVNNG DVPVPQVPIT GQTIGAGVAG SSGKSNKHSQ TAPIAPVGVG IYGTTTIGQP  240
FNTTSASVVG TPVNLVPPTN KSCGVQPPIP EAVVSGAYNE AQIYTLVTFL KHKRTKSSEE  300
SYAYSCLVLS SSVVHE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-99MYB family protein