PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17502.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17662.6 Da    PI: 4.2184
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-241059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                r enk+nrqvtfskRr g+ KKA+ +SvLCdaeva+iif ++ kl+e+ss
  PHU17502.1 10 RTENKTNRQVTFSKRRGGLVKKAQQISVLCDAEVALIIFFHNAKLFEFSS 59
                789*********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MGRGKVELRR TENKTNRQVT FSKRRGGLVK KAQQISVLCD AEVALIIFFH NAKLFEFSSD  60
SWLWCNLLMQ KLLLQQRMPW MEEAFPASSN LVQAASYGGE VLLNCWKLKN LLNDERPSQE  120
DNQEDESDDD SDDVNESDSN LDNVDESDSD LDGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-29MIKC_MADS family protein