PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17524.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 1413aa MW: 157254 Da PI: 7.2945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	1322	1345	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp C k F+++ + ++H+r+H PHU17524.1 1322 RCPieGCEKKFTSHKYAQVHQRVH 1345 69999*****************99 PP
2	zf-C2H2	10.8	0.0015	1381	1407	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H PHU17524.1 1381 YKCKveGCGLTFRFVSDYSRHRRKtgH 1407 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1413 aa Download sequence
MKCVDIPEWL KGLPVAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVVP PLPKPSKKYV 60 LHNLNMSLSK CPDFGLDGNF DPSSIKSGED KQNVESGHSR AVFTTRHQEL GHSEKRKLKG 120 AVGGLPLGAQ KQVWQSGQVY TLEQFETKSK NFARNQLGMV KEISPFVVEA MFWKLAFEEP 180 IYVEYANDVP GSAFGEPEGL FNNCRRRKRA ACKRKILDRN SGGFSRFNND EIGTLGSSVD 240 KGLCHSVETP SSSLLTPISN KYTNSSTFRP KGCGNAGEME GSAGWKLANS PWNLQVIARS 300 PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS LNFLHTGSPK TWYAVPGDCA 360 FGFEEVIRCH AYGETTDRLA ALALLGEKTT LLSPEVLVAS GIPCCRLVQN PGEFVVTFPR 420 AYHVGFSHGF NCGEAANFGT PQWLAVAKEA AVRRAAMNYL PMLSHQQLLY LLTMSFVSSV 480 PRSLLPGVRS SRMRGRQKEE REFLVKKAFI EDIEKESNLV KVLLQKSFAD NAMLWDVDML 540 PSSGKESGLH KHVSADASRG NSQSDNDSQD LLDQMSLYME NYSDFYVDDD VSCEFEIDSG 600 TLPCIACGIL GFPFMALVQP SEKSAKHLFP EDFQNKQEPG VLKHVESDSH SDHRGMLEDY 660 NGVDRIGRNG VHSLNQDEVS LYAQPSESAV SPHEGQTSQS HHLSHTDNAV LTSKVDFEKE 720 CDVSRGLVRP QIFCLEHAIQ TEELLRTKGG ANVLVICHSD FQKIRGHAAI VAEEIDTTYK 780 YNEIPLANAS QGHLSLIDLA MRDEEQGKCA EDWTLKLNIN LRHCVKVQRN CPLKKLKHAL 840 ILGGLFSDTT RSSDSLSPLK WQSRKVRSKR KLNNSTESTP FANVQIEKVV DSGSTVDVQN 900 TRNRNIRIQY SRKKYKRKAC SFVDPFNDSK EVLLADAKTL GSTLHRDENA GTTSVAGRFV 960 AASDGKPLLR HEHEMLLLNR DQNGNLLAPQ EADLLVTTSL VVELDEARAE ICTTEKFSLE 1020 NKTCITNSST CHTENKTTAA ETSGETEITH VHVVQSTAYN EKLEENRDMT ESVIRGKSAQ 1080 LMEADFERDY HSGDDKAIMT RSLVPVNSSG CCTDGPSRSC DAKIEDQVSE QFGSGSEASD 1140 SDTSHKSVEQ EIQIDNSVKD IAVSDHVTPI EEASASAGSL KMTTKTSRIK HSQSGNGISE 1200 QDKKESNEDT SAIVLRLTGK SGGKRSELDL LTNDGHSVGG FAKSPCEGLR PRARKNVPGS 1260 RVDTKELLEK KSMGNKVRRS LHSSISPKDK KEQRKGAHRC NLEGCWMSFQ TKVELQLHKH 1320 NRCPIEGCEK KFTSHKYAQV HQRVHENDRP LKCPWKGCTM TFKWAWARTE HLRVHTGERP 1380 YKCKVEGCGL TFRFVSDYSR HRRKTGHYVD AVN

Sequence ? help Back to Top

Protein Sequence Length: 1413 aa Download sequence

MKCVDIPEWL KGLPVAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVVP PLPKPSKKYV  60
LHNLNMSLSK CPDFGLDGNF DPSSIKSGED KQNVESGHSR AVFTTRHQEL GHSEKRKLKG  120
AVGGLPLGAQ KQVWQSGQVY TLEQFETKSK NFARNQLGMV KEISPFVVEA MFWKLAFEEP  180
IYVEYANDVP GSAFGEPEGL FNNCRRRKRA ACKRKILDRN SGGFSRFNND EIGTLGSSVD  240
KGLCHSVETP SSSLLTPISN KYTNSSTFRP KGCGNAGEME GSAGWKLANS PWNLQVIARS  300
PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS LNFLHTGSPK TWYAVPGDCA  360
FGFEEVIRCH AYGETTDRLA ALALLGEKTT LLSPEVLVAS GIPCCRLVQN PGEFVVTFPR  420
AYHVGFSHGF NCGEAANFGT PQWLAVAKEA AVRRAAMNYL PMLSHQQLLY LLTMSFVSSV  480
PRSLLPGVRS SRMRGRQKEE REFLVKKAFI EDIEKESNLV KVLLQKSFAD NAMLWDVDML  540
PSSGKESGLH KHVSADASRG NSQSDNDSQD LLDQMSLYME NYSDFYVDDD VSCEFEIDSG  600
TLPCIACGIL GFPFMALVQP SEKSAKHLFP EDFQNKQEPG VLKHVESDSH SDHRGMLEDY  660
NGVDRIGRNG VHSLNQDEVS LYAQPSESAV SPHEGQTSQS HHLSHTDNAV LTSKVDFEKE  720
CDVSRGLVRP QIFCLEHAIQ TEELLRTKGG ANVLVICHSD FQKIRGHAAI VAEEIDTTYK  780
YNEIPLANAS QGHLSLIDLA MRDEEQGKCA EDWTLKLNIN LRHCVKVQRN CPLKKLKHAL  840
ILGGLFSDTT RSSDSLSPLK WQSRKVRSKR KLNNSTESTP FANVQIEKVV DSGSTVDVQN  900
TRNRNIRIQY SRKKYKRKAC SFVDPFNDSK EVLLADAKTL GSTLHRDENA GTTSVAGRFV  960
AASDGKPLLR HEHEMLLLNR DQNGNLLAPQ EADLLVTTSL VVELDEARAE ICTTEKFSLE  1020
NKTCITNSST CHTENKTTAA ETSGETEITH VHVVQSTAYN EKLEENRDMT ESVIRGKSAQ  1080
LMEADFERDY HSGDDKAIMT RSLVPVNSSG CCTDGPSRSC DAKIEDQVSE QFGSGSEASD  1140
SDTSHKSVEQ EIQIDNSVKD IAVSDHVTPI EEASASAGSL KMTTKTSRIK HSQSGNGISE  1200
QDKKESNEDT SAIVLRLTGK SGGKRSELDL LTNDGHSVGG FAKSPCEGLR PRARKNVPGS  1260
RVDTKELLEK KSMGNKVRRS LHSSISPKDK KEQRKGAHRC NLEGCWMSFQ TKVELQLHKH  1320
NRCPIEGCEK KFTSHKYAQV HQRVHENDRP LKCPWKGCTM TFKWAWARTE HLRVHTGERP  1380
YKCKVEGCGL TFRFVSDYSR HRRKTGHYVD AVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein