PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17660.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 452aa MW: 48973.6 Da PI: 5.6142

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	78.9	8.3e-25	45	139	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei +LqGl+ +++ + d++ fy +++++s ++ksql+eK+rrL+kKf+ +++ +g ++s+ ++hdq ++l+k++W+ PHU17660.1 45 KFHRIWTEPDEIRFLQGLVAGSSDNL-VYPRDLNVFYTRFSNNMSQPYTKSQLSEKLRRLRKKFRVVSSRLVKGFDISLLSPHDQALYDLAKQLWH 139 699***************977776.5556**************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ 60 GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI 120 SLLSPHDQAL YDLAKQLWHP DFAYMSPFNS DKSNKSGLVG VKVRFSGNVE HPGQDGITRN 180 GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE 240 CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGD 300 FGSGVVGERS NVDGFGSGVV EERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA 360 VVGERSNVDD LTNGVAGERS NLGDFTNGFV GERSNVGDFT NGVVGEGSNL GGLLKEASSD 420 KFEERWREQR VAELDLLARR MRLVLEHSLQ RQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ  60
GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI  120
SLLSPHDQAL YDLAKQLWHP DFAYMSPFNS DKSNKSGLVG VKVRFSGNVE HPGQDGITRN  180
GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE  240
CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGD  300
FGSGVVGERS NVDGFGSGVV EERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA  360
VVGERSNVDD LTNGVAGERS NLGDFTNGFV GERSNVGDFT NGVVGEGSNL GGLLKEASSD  420
KFEERWREQR VAELDLLARR MRLVLEHSLQ RQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-07	GeBP family protein