PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17741.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 201aa MW: 21949.1 Da PI: 5.6966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.3e-43	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ae a++++ PHU17741.1 43 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHA 141 7***********************************************************************************************998 PP DUF260 100 e 100 e PHU17741.1 142 E 142 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MKCSDPKPIA TISSMNSSSS SFSSTVATAT SSILSTPPVI LSPCAACKIL RRRCVEKCVL 60 APYFPPTEPL KFTIAHRVFG ASNIIKMLQE LPEEQRADAV NSMVYEANAR IRDPVYGCAG 120 AICQLQKQIS ELQAEFAKAH AEIMNLKCQN SNLLALVCME VSENSSSSSL LSSDHINDYG 180 NNTSMFLEDN SVYAAWEPLW T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-72	LBD family protein