PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17795.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20183.3 Da    PI: 9.1079
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.7e-121555141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                k+i++k+      s+ ++++ KKA+ELS+LC++++a+iifs
  PHU17795.1 15 KFIKDKRVEGARISNMQKTLCKKANELSILCGIKIAIIIFS 55
                6788888888889999************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MERKSYQIRK NVEIKFIKDK RVEGARISNM QKTLCKKANE LSILCGIKIA IIIFSVGSQP  60
FLFGNPDVES VVHQFLEAKQ STTSAFSVKK KKKVEENKAQ EKFGKGNVTH HLSEDFELID  120
SKRLEKFNLE IEKLEDHLNK EIDLLNYVIH SEDPNFELKM NVTSSLTLLT NWLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-12M-type_MADS family protein