PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18033.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 78aa    MW: 9052.62 Da    PI: 10.6147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.8e-271058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie+ +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g++  ys
  PHU18033.1 10 KIESLTNRQVTFSKRRNGILKKVYELSVLCDVDVAIIMFSPSGRFTHYS 58
                59********************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KVYELSVLCD VDVAIIMFSP SGRFTHYSRK  60
RRIEDVLSEL ISLPESER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-31MIKC_MADS family protein