PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18180.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 351aa MW: 40007.9 Da PI: 6.7573

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++++ G g+W++ +++ g++R++k+c++rw +yl PHU18180.1 14 KGPWTPEEDQKLTNYINKNGHGSWRALPKHAGLNRCGKSCRLRWSNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l PHU18180.1 67 RGKFSQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRSPCCDES GLKKGPWTPE EDQKLTNYIN KNGHGSWRAL PKHAGLNRCG KSCRLRWSNY 60 LRPDIKRGKF SQEEEQTILN LHAVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DIFNSLQHLI ALANLKELIE HNHSWEEQVM RLHYLQNLLQ QPHNNNISTL 180 SAIQNVEANY NLLNSLKDSQ FLDSNSHLGN HIVHQIPSSL DQPIQNSIPF SHLTELHTPC 240 SFQTSLNKDK VPPQDIEFTV MSHEETSPAS SWLPPLSPSL PPPPPPVSNN QRRKENSSEV 300 VISSCLPEDM KVLDNFFQQD SEQSLSNEGA PPSIWSDLPL EDSFFQGLDK F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRSPCCDES GLKKGPWTPE EDQKLTNYIN KNGHGSWRAL PKHAGLNRCG KSCRLRWSNY  60
LRPDIKRGKF SQEEEQTILN LHAVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DIFNSLQHLI ALANLKELIE HNHSWEEQVM RLHYLQNLLQ QPHNNNISTL  180
SAIQNVEANY NLLNSLKDSQ FLDSNSHLGN HIVHQIPSSL DQPIQNSIPF SHLTELHTPC  240
SFQTSLNKDK VPPQDIEFTV MSHEETSPAS SWLPPLSPSL PPPPPPVSNN QRRKENSSEV  300
VISSCLPEDM KVLDNFFQQD SEQSLSNEGA PPSIWSDLPL EDSFFQGLDK F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	5e-94	MYB family protein