PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18192.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 242aa MW: 27942.7 Da PI: 9.0523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	25	64	3	40
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +++ a + + +W+++a+ ++ g++ ++ PHU18192.1 25 EWTKEENKKFESALAIYDETtpnRWSKVAEIIP-GKSVLDV 64 7***************99**********.998776 PP
2	Myb_DNA-binding	41.5	3e-13	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky PHU18192.1 122 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 166 8***************************789*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
METLCPTSFV PNSNWTMQQS KSTTEWTKEE NKKFESALAI YDETTPNRWS KVAEIIPGKS 60 VLDVMMQYKE LVADVSDIEA GLVPNPRRFV SSFALEFADH RKIHTFSKRG KSYDQERKKG 120 VPWTEEEHRR FLMGLEKYGK GDWRNISRNF VISKTPTQVA SHAQKYYLRQ LSGEKERKRP 180 SIHDITTVNL TNNELLNNNN KLMCEVKSYM SPLQRSTSPA DVLIGCWNNS FDGDLMAFGQ 240 FV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	8e-77	MYB family protein