PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18247.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 786aa    MW: 87773.7 Da    PI: 5.7326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3811.4e-1164147832374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ cA+av++g+++ a++lL+++++ + p gd mqRla+yf+ +L+ar+a+s++++ykal +++ s    ++ l+a++l+  ++P+ ++s +  N+
  PHU18247.1 414 STLLTLCAQAVAAGNQRTANELLKQIRQSSCPMGDGMQRLAHYFADGLEARMAGSGTHIYKALIARPVS---ATDILKAYHLLLAACPFRTVSIFFSNK 509
                 57899*************************************************************999...99************************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +Il+ +e++++vHiiD++i+ G+QWp L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++ +a+++e+++le+L+++
  PHU18247.1 510 TILNLAEKASTVHIIDIGIMWGFQWPGLIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAESFKVPFEFHA-IAQKWETIKLEDLKIS 607
                 ****************************************************9*****************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gEal+Vn+ ++  +llde+v ++s+rd +L+l+++l+P+v++    +  +n++ F+ rf eal +ys+lfd+lea++pre +er+ vE+ +lg+e++n
  PHU18247.1 608 KGEALVVNCLFRFRNLLDETVVVNSPRDVFLNLLRRLNPDVFIQGIVNGAYNAPFFVSRFREALFHYSSLFDMLEATIPREMHERMLVEKNILGQEAMN 706
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+acegaer+er et+++W+ r+++aGF+++pl+++++  +    + ++++ ++++ +s++l++gWk+r  v++S W+
  PHU18247.1 707 VIACEGAERIERPETYKQWQIRIMKAGFRQLPLDQEIMRLITEGFKVYDKN-FMIDVDSEWLLQGWKGRFGVALSTWK 783
                 ***************************************999999999855.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    
MGLYEAESAI KLEDEACSFF ADPNLINNLR VSDNLVNRSV DISPFQSDVG PNTLVPSTAD  60
DFHEDYDFCD GALKYINEML MEEDIEEKTC MFQESAALQA AERSFYEVIG EKYPSSANHE  120
KPSSLGQNEP YAVDLSGFKY SGNDGLPCPN WILDLGEDDV SHVSHVPDGV ALHSTSRSSY  180
SPSGTVTDVL VDSPVSTLGI ADIFSDREPI MKFKKGVEET SKLLGVALRS TSVSSHSLSG  240
TATDLPVDSP VSTIRIPDIF SDGESIMQFK KGVEEASKFL PTGNSLLADV RYNVVGKEQY  300
EERKDAVVKF EKYGEKQSPE RSRGKKNTLH EDIVDSTEGR SNKQSAVFSE PTVRSEMFDR  360
VLLCSAGKNE SALRETLQAI SRQNALENGL SKGSNGKKFQ GKKKGRKRDV VDLSTLLTLC  420
AQAVAAGNQR TANELLKQIR QSSCPMGDGM QRLAHYFADG LEARMAGSGT HIYKALIARP  480
VSATDILKAY HLLLAACPFR TVSIFFSNKT ILNLAEKAST VHIIDIGIMW GFQWPGLIQR  540
LSSRPGGPPK LRITGIDFPN PGFRPAERVE ETGRRLANYA ESFKVPFEFH AIAQKWETIK  600
LEDLKISKGE ALVVNCLFRF RNLLDETVVV NSPRDVFLNL LRRLNPDVFI QGIVNGAYNA  660
PFFVSRFREA LFHYSSLFDM LEATIPREMH ERMLVEKNIL GQEAMNVIAC EGAERIERPE  720
TYKQWQIRIM KAGFRQLPLD QEIMRLITEG FKVYDKNFMI DVDSEWLLQG WKGRFGVALS  780
TWKAAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein