PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18307.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 317aa    MW: 36724.6 Da    PI: 6.7888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl
       PHU18307.1 39 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 86
                     89********************************************97 PP
2Myb_DNA-binding51.32.7e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PHU18307.1  92 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 135
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MDHHQKIEVD SGRGGGRGGD YTKNNQEIRE EDIVMDLRRG PWTVEEDFTL INFIAHHGEG  60
RWNSLARCAG LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH  120
LPGRTDNEIK NYWRTRVQKH AKQLKCDVNS KQFKDTMKYL WMPRLAERIQ AAAASNPATA  180
SSSGPPTTTY IQNQEIQHSL PNMNHHMSDY TPIPFIEKTN SLNYSATSAS SDNYSSDLTD  240
GCYNFPINQS NNQDYSQVNQ STNQMCYGES TINPTSYDFH HGFQGFQEVD QQNNTQWMDN  300
PWNIEDVCFL QQLNNDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-85MYB family protein