PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18356.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 237aa MW: 27976.8 Da PI: 10.0185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.9e-19	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++v+++G g+W+++ar g++R +k+c++rw +yl PHU18356.1 13 KGPWTVEEDKLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 60 79********************************************97 PP
2	Myb_DNA-binding	48.4	2.2e-15	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w+++ PHU18356.1 66 RGQITPYEERIILELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110 6788999*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRWGIIEEE WRKGPWTVEE DKLLIEYVNL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL 60 RPDLKRGQIT PYEERIILEL HAIWGNRWST IARSLPGRTD NEIKNYWRTH FKKKVKKSST 120 DNFEKTKARL LKRQQSQQKQ LLNSQIDMKR FMSQNENKVP SHVPKQDMAI LYQNNSFHEQ 180 EQSGFFYSMN NGYAIVPEAS SNEDIMWDIG LWNLDDFNVN LPVSAVESGF AIKEFKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-77	MYB family protein