PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18799.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 132aa    MW: 15254.3 Da    PI: 10.2371
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.58.5e-091664250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie +  r+ tfsk r g+ KKA+ L    +++  +++ s+t+k+y + 
  PHU18799.1 16 KIEKDAHRYSTFSKQRSGLYKKASQLVRENNVDLGIVLTSPTDKVYAFV 64
                59999*****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MEGKKTTGRR KIPLVKIEKD AHRYSTFSKQ RSGLYKKASQ LVRENNVDLG IVLTSPTDKV  60
YAFVHPTSNA VIDRFINLKT DFGDRFVAEN SRDKVNQLND RLNELDKREE IAKESLLALN  120
EMDKTREKSL DR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-22M-type_MADS family protein