PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18937.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21417.6 Da    PI: 8.0384
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.5e-131759345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + ks   + fsk r+ + KKA  LSvLC++e a++ifs tg+
  PHU18937.1 17 QKQKSSEDIVFSKKRKALCKKAMDLSVLCGIEFAILIFSVTGE 59
                5678889999******************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MARKSCMMKE SGDRKFQKQK SSEDIVFSKK RKALCKKAMD LSVLCGIEFA ILIFSVTGEP  60
FIFGKPDAES VVDRFLKAKQ ANECSSSCRA TVEKICEHKR HMRMDQNKKA TIDDKGKGKA  120
IEENSECSTW KSFDGTDSEA LEKQLTQEIE SFENDLIKEI NELKLKISAK DTESALKVIS  180
STTPSDWLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-15M-type_MADS family protein