PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU19413.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 24051.3 Da PI: 8.6647

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU19413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	47	100	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ +e++ +LA++lgL+ qV vWFqNrRa++k+ PHU19413.1 47 KRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKN 100 45899***********************************************95 PP
2	HD-ZIP_I/II	112.6	2.5e-36	46	136	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk ++++ e+ rLe+ev +++e+l PHU19413.1 46 RKRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKIQHETTIIEKYRLETEVLKMKEQLC 136 8**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MILISHQFYP HIYVRLTQDL QEETVKPRRR KNKKREGNNN SSVVVRKRKL SEEQVNLLER 60 SFGDEHKLET ERKDKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL KIQHETTIIE 120 KYRLETEVLK MKEQLCQAEK QIQRLLFERN CDISSNSPTS SIFSMEQPQF NLGEFGMEGL 180 LMDNNVFFVG DNQSTYATLW DN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	31	PRRRK
2	28	36	RRRKNKKRE
3	28	49	RRRKNKKREGNNNSSVVVRKRK
4	29	50	RRRKNKKREGNNNSSVVVRKRK
5	33	54	RRRKNKKREGNNNSSVVVRKRK
6	46	75	RKRKLSEEQVNLLERSFGDEHKLETERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-51	HD-ZIP family protein