PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU20040.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19750.6 Da    PI: 7.9421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU20040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.9e-222877149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i n+  r+vtfskRr g++KKA+EL++LC++e+a+i+ s ++++l+++
  PHU20040.1 28 KPIANQNSRHVTFSKRRSGLFKKASELCILCGVEIAIIVQSlKRQRLFTF 77
                689*************************************9567889888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MNMNNTDAVN STAMNVTKAQ GRRKIAMKPI ANQNSRHVTF SKRRSGLFKK ASELCILCGV  60
EIAIIVQSLK RQRLFTFGHP SADAIIDRIG CGEEEIIDES KRVKGNNNGF WWNESIDDMG  120
IEDLDKFVDA LEELKKRVNM RVDELNMIKG SSSLPSTSTM NQAIDYCASV VPFDFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-28M-type_MADS family protein