PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20098.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 665aa MW: 73790.4 Da PI: 6.8617

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.6	2e-29	60	144	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +++++lk+plWeevs+km++ g++rs+k+Ckek+en+ k++k++k+g+ ++++++ ++++f+qlea PHU20098.1 60 RWPRQETIALLKIRSEMDPVFKDSSLKGPLWEEVSRKMADLGYHRSSKKCKEKFENVYKYHKRTKDGRASKADGK--SYRFFEQLEA 144 8******************************************************************975555..5*****85 PP
2	trihelix	98.2	7e-31	469	553	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev Li++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ PHU20098.1 469 RWPKAEVESLIKLRTNLDMKYQENGPKGPLWEEISSSMKKIGYNRNAKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHMLD 553 8*******************************************************************8.99*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MLGVSGIISD GDGTGGENPE SGGGGATSGG SSEIGLGGGG GSSSGGFMIE EGEKNSGGNR 60 WPRQETIALL KIRSEMDPVF KDSSLKGPLW EEVSRKMADL GYHRSSKKCK EKFENVYKYH 120 KRTKDGRASK ADGKSYRFFE QLEALENTQS HHSLLPPSNS RPPPPPLEAT PINMAMPMPT 180 SNVQVQASQG TGTPHLVTVS SAPPPPPPNI PFAPSHQNVQ LSSPVAPSSQ PAVNPINNIP 240 HQVNANLPAH QNISAMSYST SSSTSSDEDI QRRHKKKRKW KDYFEKFTKD VINKQEESQR 300 KFLEKFEQKE RDRMVREETW KAQEMARLNR EHDLLVQERA MAAAKDAAVI SFLQKITEQK 360 NIQIPNSINV ALPSAQVQLQ MPENPPPAPA PTHSPQPQQQ TQPTIVVSPA PQPSPALVVP 420 VSLPMTIPAP APALMQSLPL TPPVPAKNVE LAPKNDNGGE SHSPASSSRW PKAEVESLIK 480 LRTNLDMKYQ ENGPKGPLWE EISSSMKKIG YNRNAKRCKE KWENINKYFK KVKESSKKRP 540 EDSKTCPYFH MLDALYKEKA KNETSSLTSG FPLNPENNPM EPIMARPEQQ WPLPRHHQQH 600 QHHQQHESSR MDHDHDHESD NMDEDDHDDE DEDEDEENAY EIVANKQQPS MASANTTTTT 660 ATTTV

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MLGVSGIISD GDGTGGENPE SGGGGATSGG SSEIGLGGGG GSSSGGFMIE EGEKNSGGNR  60
WPRQETIALL KIRSEMDPVF KDSSLKGPLW EEVSRKMADL GYHRSSKKCK EKFENVYKYH  120
KRTKDGRASK ADGKSYRFFE QLEALENTQS HHSLLPPSNS RPPPPPLEAT PINMAMPMPT  180
SNVQVQASQG TGTPHLVTVS SAPPPPPPNI PFAPSHQNVQ LSSPVAPSSQ PAVNPINNIP  240
HQVNANLPAH QNISAMSYST SSSTSSDEDI QRRHKKKRKW KDYFEKFTKD VINKQEESQR  300
KFLEKFEQKE RDRMVREETW KAQEMARLNR EHDLLVQERA MAAAKDAAVI SFLQKITEQK  360
NIQIPNSINV ALPSAQVQLQ MPENPPPAPA PTHSPQPQQQ TQPTIVVSPA PQPSPALVVP  420
VSLPMTIPAP APALMQSLPL TPPVPAKNVE LAPKNDNGGE SHSPASSSRW PKAEVESLIK  480
LRTNLDMKYQ ENGPKGPLWE EISSSMKKIG YNRNAKRCKE KWENINKYFK KVKESSKKRP  540
EDSKTCPYFH MLDALYKEKA KNETSSLTSG FPLNPENNPM EPIMARPEQQ WPLPRHHQQH  600
QHHQQHESSR MDHDHDHESD NMDEDDHDDE DEDEDEENAY EIVANKQQPS MASANTTTTT  660
ATTTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	278	QRRHKKKR
2	271	279	QRRHKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-48	Trihelix family protein