PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20351.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 261aa MW: 29842.9 Da PI: 4.9612

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	21	73	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ +++ ++A++lgL+ rqV +WFqNrRa++k PHU20351.1 21 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWK 73 4567889*********************************************9 PP
2	HD-ZIP_I/II	124.3	5.5e-40	20	110	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl +qv++LE+ Fe ++kL+p+rKv++a+eLglqprqva+WFqnrRAR+ktkqlE dy+ Lk++y+al+++ +++e+e+e L +elk PHU20351.1 20 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWKTKQLEIDYNILKANYEALQHNYSKVEQEKEGLITELK 110 9*************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MLDGLEDEDG IEESGCGTGK KRRLRVDQVQ ALEKIFEVDN KLDPDRKVKI AQELGLQPRQ 60 VAIWFQNRRA RWKTKQLEID YNILKANYEA LQHNYSKVEQ EKEGLITELK GLKEKLGEET 120 ISPAFQRPQE LILNKLKNSS DFVDSKDGSS DSDSSGVMNE ENYTNTTTLN YQQLMPKVSS 180 YNNALDHLSL SSSTYTQLLD HPRASNSTSS SMRGYNNNNG HQQQGVGRME EQNGFTTEDS 240 CNIYSVDQAP NLYWYFSDHR N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	49	KKRRLRVDQVQALEKIFEVDNKLDPDRKVK
2	68	76	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-37	HD-ZIP family protein