PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20480.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 27295.2 Da PI: 5.1228

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.6e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va++ifsstgkl+e++s PHU20480.1 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALVIFSSTGKLFEFAS 59 68***********************************************86 PP
2	K-box	49.1	2.4e-17	95	171	23	99
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +L k++ re+R+l Ge+Le Lsl+eLqq+e++Le + +++ + K ++++i++lq+k el eenk+L++k+e PHU20480.1 95 RLSKQVADKTRELRQLRGEELEGLSLEELQQIEKKLEAGFSRVLEIKGTRIMDEISNLQRKGAELMEENKQLKQKME 171 78888888899***************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVALVIFSS TGKLFEFASS 60 SMNDILGKYK LQTSSHEKVD QPSLDLQLEN SLNMRLSKQV ADKTRELRQL RGEELEGLSL 120 EELQQIEKKL EAGFSRVLEI KGTRIMDEIS NLQRKGAELM EENKQLKQKM EMMREGKLPL 180 LTDMDCMVME EGQSSDSIIT TNNVCSSNSG PPPEDDSSNA SLKLGCNNGP AVEDDCSITS 240 LKLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	6e-70	MIKC_MADS family protein