PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU20606.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28217.9 Da    PI: 8.8158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU20606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18121175256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L  rqV vWFqNrRa+ k
  PHU20606.1 121 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 175
                 788899***********************************************98 PP
2HD-ZIP_I/II120.49.2e-39121209190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq+ +LE+sF+e+++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lkeen+rL+ke +eL+ +
   PHU20606.1 121 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKEENRRLNKEIQELK-S 209
                  69*************************************************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MICNTRLSLS LGSSTIPPHQ NNKKRKATQD DNNQELALGL STSSELITNN NCDHMINPQL  60
LGGVNSSVSS LSNTSVKRER DASSLEEEVE NLETKKVVLI SPKVLVHNDD DDEDVHVYGT  120
RKKLRLTKEQ SDVLEDSFKE HTTLNSKQKR DLARRLSLRP RQVEVWFQNR RARTKLKQTE  180
VDCEILRKCY EDLKEENRRL NKEIQELKSL KMSAPFRLQL SAATLSMCPS CERSTYGGST  240
NRIFITN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126TRKKLRL
2170178RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-57HD-ZIP family protein