PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU20707.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 172aa    MW: 18879.3 Da    PI: 8.2899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU20707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.3e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lrr+C+++C+l+ ++     p +q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv G+vg++++++++++q+++++
  PHU20707.1   2 SCNGCRILRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMSFISAVPQNRRPALFKSLLFEACGRTVNPVTGVVGLLTTGNWHVCQKAVQT 100
                 6*************************99*******************************************************************9998 PP

      DUF260  95 all 97 
                 +l+
  PHU20707.1 101 VLA 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MSCNGCRILR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMS FISAVPQNRR  60
PALFKSLLFE ACGRTVNPVT GVVGLLTTGN WHVCQKAVQT VLAGGNPRSY GGAWDIPSQF  120
SNESGSDHVD TTEWIGSRKR RRTTSSFGSE TELSELDSVK GEEEPKLLNL FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142RKRRR
2138143RKRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-53LBD family protein