PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20895.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 276aa MW: 30512.9 Da PI: 8.6859

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.9e-19	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + PHU20895.1 43 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 88 79***************************9.*********985 PP
2	Myb_DNA-binding	56	8.9e-18	97	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ PHU20895.1 97 PFSPSEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 139 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MQLPPSLGFS FTIIRCSTST SSSSESSSSE STPRNDNKAE KIKGPWSAEE DKILTKLVER 60 YGARNWSLIS KYIKGRSGKS CRLRWCNQLS PNVEHRPFSP SEDETILAAH AKYGNRWATI 120 ARLLPGRTDN AVKNHWNSTL KRRYQQLLQQ QNSGQMVNGL EFRSGSGSGS GSGSGSGMEY 180 MNVDESPKGN TNNYATTMTT MAQCNYTSGV WRNNNNYGGG ECDDPMTTLS LAPPGMAGEE 240 MPERKTESFP AGFWDVMRDV IAKEVREYVA STGFPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-56	MYB family protein