PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20916.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 472aa MW: 52238.4 Da PI: 4.8337

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.9	9.4e-11	157	212	72	128
NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ tk+g+W+a+g+ e+++ +++ g ++t+ f + +ap +kt W+m+ey++ PHU20916.1 157 TTEEKETKRGRWRAKGSACEIFA-NSAISGWRTTFEFSQVQAPIEQKTVWMMQEYKV 212 45677899*************.999**************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MSEEMGNKSR VGFTEISRNN KICRRRRRRL PELADSVGAQ AEETMSLRAL LLSELGISMG 60 LSNSLLMGEE KLRDVVGAMC SASQAVFAEV AAAIVVAIVG STDAISFTSS YWTNDEIILS 120 LDQINRGSPI PDDLIVDNPY QYDTSNLPDG AWFLVKTTEE KETKRGRWRA KGSACEIFAN 180 SAISGWRTTF EFSQVQAPIE QKTVWMMQEY KVTLKGQHGQ TNSQESALCR VFSCCSEAKP 240 EKNYDFDTKG ELQVVCFSWL ACAFVCCYSL QKFFQVNNQT EGVGSSLVDK PRDHSDDIAA 300 DLDCILRGDY LELDDLASHS SSSENSSRLS FASEEYFDSL ALLRDLDDDA KKKDLNGNGS 360 TDNYNVMMCV LANDAAVQLA PLESLVKGSE ATAVKETPQA PDNNKTKSFS EQFPDHSAKR 420 LKAERTDEGP SHSCRATTSS SSSSSGDEPG RVARREEKRA KKFTKYLCFM PF

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MSEEMGNKSR VGFTEISRNN KICRRRRRRL PELADSVGAQ AEETMSLRAL LLSELGISMG  60
LSNSLLMGEE KLRDVVGAMC SASQAVFAEV AAAIVVAIVG STDAISFTSS YWTNDEIILS  120
LDQINRGSPI PDDLIVDNPY QYDTSNLPDG AWFLVKTTEE KETKRGRWRA KGSACEIFAN  180
SAISGWRTTF EFSQVQAPIE QKTVWMMQEY KVTLKGQHGQ TNSQESALCR VFSCCSEAKP  240
EKNYDFDTKG ELQVVCFSWL ACAFVCCYSL QKFFQVNNQT EGVGSSLVDK PRDHSDDIAA  300
DLDCILRGDY LELDDLASHS SSSENSSRLS FASEEYFDSL ALLRDLDDDA KKKDLNGNGS  360
TDNYNVMMCV LANDAAVQLA PLESLVKGSE ATAVKETPQA PDNNKTKSFS EQFPDHSAKR  420
LKAERTDEGP SHSCRATTSS SSSSSGDEPG RVARREEKRA KKFTKYLCFM PF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	9e-10	NAC family protein