PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU21130.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 380aa MW: 41040.8 Da PI: 8.7399

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU21130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.9	1.5e-69	150	303	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsalsstkls 92 +g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++ + +++ +k + +++ ++s +l+ PHU21130.1 150 TGGMNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQHQQNLQqtqllslraDSNIPK-----RPRENPSSSLVRLP 243 6899**************************************************998877655455554322222223.....34566777888999 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++s el + +P+evss+avfrcv+vs+vdd+++++aY+tav+igGh+fkGiLydqG+e PHU21130.1 244 NNSSGLELGGH-FPSEVSSQAVFRCVKVSAVDDADDQYAYHTAVNIGGHLFKGILYDQGPE 303 99988888776.*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSGFFTLGGS GGGGNKSSHH QQQQQQEQDQ LGNNSFLLFK DEEIYNKGFE LWQQYYQLHQ 60 QQRTHPSPHH HHHHHLQQQH QDVDFSVGVG PSSNRRIIST GSSSSSGGNN NIIAGGDHNN 120 YSTLNNSSSF RSSSGFRVIR ASSTSGGGAT GGMNCQDCGN QAKKDCSHMR CRTCCKSRGF 180 QCQTHVKSTW VPAAKRRERQ QQLTSLQQHQ QNLQQTQLLS LRADSNIPKR PRENPSSSLV 240 RLPNNSSGLE LGGHFPSEVS SQAVFRCVKV SAVDDADDQY AYHTAVNIGG HLFKGILYDQ 300 GPEGRYSGGG GGGGGESSSG SGAAQQALNF ITGATTSTTA AATTSHHHHQ PPVTVFDSSV 360 YPAPITAFLA GTQFFPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSGFFTLGGS GGGGNKSSHH QQQQQQEQDQ LGNNSFLLFK DEEIYNKGFE LWQQYYQLHQ  60
QQRTHPSPHH HHHHHLQQQH QDVDFSVGVG PSSNRRIIST GSSSSSGGNN NIIAGGDHNN  120
YSTLNNSSSF RSSSGFRVIR ASSTSGGGAT GGMNCQDCGN QAKKDCSHMR CRTCCKSRGF  180
QCQTHVKSTW VPAAKRRERQ QQLTSLQQHQ QNLQQTQLLS LRADSNIPKR PRENPSSSLV  240
RLPNNSSGLE LGGHFPSEVS SQAVFRCVKV SAVDDADDQY AYHTAVNIGG HLFKGILYDQ  300
GPEGRYSGGG GGGGGESSSG SGAAQQALNF ITGATTSTTA AATTSHHHHQ PPVTVFDSSV  360
YPAPITAFLA GTQFFPPPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	5e-62	SRS family protein