PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU21477.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 260aa MW: 30584.5 Da PI: 9.2914

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU21477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll+++vk++G g+W+++ar g++R +k+c++rw +yl PHU21477.1 23 KGPWTADEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 70 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.9e-16	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+++++++++++G++ W+tIar ++ gRt++++k++w+++ PHU21477.1 76 RGQITPNEEKIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MVCEIISEQM GSNWGFIEEV WRKGPWTADE DRLLIEYVKL HGEGRWNSVA RLTGLRRNGK 60 SCRLRWVNYL RPDLKRGQIT PNEEKIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKTKNSCD NSEKSRASLW KRQQFQLQQQ QQQQIKNQID IKKVMSLPTM AQAKQEMAIL 180 YPNIYTIDQQ DQVGLFYSML NNSTSISQSE PSSSNEDIMW DDLWNLDDFY GHFINSTTYN 240 KTNTSPCLQP MASTTTPSFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-76	MYB family protein