PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU21679.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 278aa    MW: 31444.2 Da    PI: 4.9755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU21679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++  G g+W++ ++  g+ R++k+c++rw +yl
       PHU21679.1 14 KGPWTPEEDQILVSYIQANGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.13.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
       PHU21679.1  67 RGNFTREEEDSIIQLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDQILVSYIQ ANGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TREEEDSIIQ LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKNYQ  120
APENSKRHCK KNIDSKAPST SQITLKSSHN FSNIKEGING PDPNSPQLSS SEASTVTADS  180
ESVMTMGVTN GGDQMDSYEN FIPEIDESFW TDDLLSTADN SSFDMAISGG EELQGQFPFY  240
DMKQESVELD VGAKLEDDMD FWYNVFIKSG DLLELPEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-90MYB family protein