PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22147.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 430aa MW: 46352.9 Da PI: 9.0057

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.6	8.5e-13	46	71	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ + C++++rtG C yG++C+F+H+ PHU22147.1 46 PGVPDCSYYMRTGSCGYGANCRFNHP 71 5789*********************8 PP
2	zf-CCCH	35.9	1.3e-11	92	117	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++t tCk+G++CkF H++ PHU22147.1 92 GEPTCQYYLKTRTCKFGASCKFDHPR 117 5789********************96 PP
3	zf-CCCH	35.1	2.2e-11	139	163	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G +CkF+H++ PHU22147.1 139 ETECSYYLKTGHCKFGITCKFHHPQ 163 679********************97 PP
4	zf-CCCH	37.1	5.1e-12	294	319	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++ +tG Ck+G++CkF+H+p PHU22147.1 294 GQTICQYYVKTGDCKFGSSCKFHHPP 319 6789********************97 PP
5	zf-CCCH	28.1	3.6e-09	340	365	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++ G+Ck+G CkF H++ PHU22147.1 340 GVQPCSFYLVKGFCKFGRACKFDHPM 365 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MELYGRSTGS NGSQSDHQSE WVAVEPETGS MQKLGLFGRE IYPERPGVPD CSYYMRTGSC 60 GYGANCRFNH PSDRTYGGKM KLGGVEFPER MGEPTCQYYL KTRTCKFGAS CKFDHPRNLG 120 GTLINIPLNT YGYPLRTGET ECSYYLKTGH CKFGITCKFH HPQPAGISVP APARPFYPTV 180 QSLPAPPEYN SGSTGLRVAR PPPLLPGSYV PSAYGPVLLH PGVVTIQNWS PYSGPVSPAL 240 SPGATPSAGM ASIYGMSQLA SSTHAFAGPY SPSALAASPS SKTQKEKSFP ERPGQTICQY 300 YVKTGDCKFG SSCKFHHPPD WIASKTNCAI GPSGLPLRPG VQPCSFYLVK GFCKFGRACK 360 FDHPMGTVQY SSSVSSLPDL PIAPYMLRSS FTLTPMLLPE LHAGFVSGSK VDASLSRAPS 420 SMKVQLVQLT

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MELYGRSTGS NGSQSDHQSE WVAVEPETGS MQKLGLFGRE IYPERPGVPD CSYYMRTGSC  60
GYGANCRFNH PSDRTYGGKM KLGGVEFPER MGEPTCQYYL KTRTCKFGAS CKFDHPRNLG  120
GTLINIPLNT YGYPLRTGET ECSYYLKTGH CKFGITCKFH HPQPAGISVP APARPFYPTV  180
QSLPAPPEYN SGSTGLRVAR PPPLLPGSYV PSAYGPVLLH PGVVTIQNWS PYSGPVSPAL  240
SPGATPSAGM ASIYGMSQLA SSTHAFAGPY SPSALAASPS SKTQKEKSFP ERPGQTICQY  300
YVKTGDCKFG SSCKFHHPPD WIASKTNCAI GPSGLPLRPG VQPCSFYLVK GFCKFGRACK  360
FDHPMGTVQY SSSVSSLPDL PIAPYMLRSS FTLTPMLLPE LHAGFVSGSK VDASLSRAPS  420
SMKVQLVQLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-163	C3H family protein