PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU22334.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 176aa    MW: 19618.1 Da    PI: 5.7855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU22334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.4e-42111101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l ++++
  PHU22334.1  11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQQDLMVTRA 109
                 6********************************************************************************************999887 PP

      DUF260 100 e 100
                 +
  PHU22334.1 110 H 110
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MKSNEPRSSS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP  60
EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QQDLMVTRAH LAYYEAKPSS  120
TASNCPLLDY DPLSVNMPSV FVDTSVSGGY LDSFSQNSFA MDQSGSTNEF GQFPFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.14e-60LBD family protein