PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22656.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 294aa MW: 33765.7 Da PI: 6.6265

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	75.4	1.1e-23	84	159	25	100
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ ++ +hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lke+ PHU22656.1 84 AKDMALDTIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQ 159 44567889***************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MCGFTRADKV RNDIIREKVG VVSVEEKMWE IRLRWFGHVM RRGADAPIRR CERLALEGFK 60 RGRDRPKKCW REVIKREMEQ LQLAKDMALD TIHKVFGASN VSKLLAHIPV SDRGEAAVTI 120 AYEAQARLQD PIYGCVSHIF ALQQQVVNLQ AQLASLKEQA AAQNLQNGSN YANPNYDKFQ 180 DVQSWFHQSE NPSTMPQFDH SSLTSNNNIG SSTQYYGSEN NYIMTSSNYY MGNNYENINL 240 VIPKENMSSF EEGGSCSVDS SFDMQTDRYN NRQWTFQDDA DDLQSVAFRY LQHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-26	LBD family protein