PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22659.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 223aa MW: 24491.5 Da PI: 8.2733

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3.1e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a+l ++k PHU22659.1 8 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQVAYLQAQLMQAK 106 7***********************99*****************************************************************9999 PP DUF260 99 ee 100 ++ PHU22659.1 107 TQ 108 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MASGTGSPCG ACKFLRRKCA ADCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVP 60 DRCEAVVTIA YEAQARIKDP VYGCVAHIFA LQQQVAYLQA QLMQAKTQLA QSLLNNSRNS 120 ENSYPQWSND IASSVGLMAS SFPTNNNNNP TYTMNSNSSP QSSLESLEHY SDGMNNNNNV 180 QEIQSRDQMF YHQGAYSSSS SRKRPSQTEL GELQALALRM MKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-56	LBD family protein