PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23413.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 465aa MW: 54055.8 Da PI: 9.121

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.3	1e-07	54	100	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 kfY +YA++ GFsvr+ ++ +s+++++i+ +++v +++ + ++ +++ PHU23413.1 54 KFYLDYAHRSGFSVRRGRMIRSRKDKSIIGQELVTKRNHELASPNSQ 100 6********************************99988765555444 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MENSNLYEEN RGVEVPSEEI DMDETGQIVP YIDVENSQDP YIGKEFQSLD DSFKFYLDYA 60 HRSGFSVRRG RMIRSRKDKS IIGQELVTKR NHELASPNSQ KFLRSKRKKS EAPKNLIDLL 120 ENSGVRPSKI ASVLTSQVGG VDQLNLTGMS TSQRSESMNK FFKDYLNSST PVSVFVLQYD 180 KAIDARYDKV REKNYKTEYS RPVLKTLYPM EDEAAKKYTR KIFQIFQEEL IQSQKFVSEK 240 FEVNDGINVY KVHQLQRQKP TYMVSLNFAL KKAVCSCHKF EFMGILCRHV LMIFIKKQIL 300 SLPVHYLLDR WTRNATKEKA IDHPSEITNV KPFTLWFNNI MMHSLGLAEQ ATRSEKHYLF 360 THQRLLQLCR ELDELPYESE EDCVPNDQVG EKYCEMNQVG EKDCEMKSCE QSQDVTLFDP 420 PVVITKGRSE SLRKKYALEV AQKAKKVSSQ KNKKVFSQKI QKVPS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MENSNLYEEN RGVEVPSEEI DMDETGQIVP YIDVENSQDP YIGKEFQSLD DSFKFYLDYA  60
HRSGFSVRRG RMIRSRKDKS IIGQELVTKR NHELASPNSQ KFLRSKRKKS EAPKNLIDLL  120
ENSGVRPSKI ASVLTSQVGG VDQLNLTGMS TSQRSESMNK FFKDYLNSST PVSVFVLQYD  180
KAIDARYDKV REKNYKTEYS RPVLKTLYPM EDEAAKKYTR KIFQIFQEEL IQSQKFVSEK  240
FEVNDGINVY KVHQLQRQKP TYMVSLNFAL KKAVCSCHKF EFMGILCRHV LMIFIKKQIL  300
SLPVHYLLDR WTRNATKEKA IDHPSEITNV KPFTLWFNNI MMHSLGLAEQ ATRSEKHYLF  360
THQRLLQLCR ELDELPYESE EDCVPNDQVG EKYCEMNQVG EKDCEMKSCE QSQDVTLFDP  420
PVVITKGRSE SLRKKYALEV AQKAKKVSSQ KNKKVFSQKI QKVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-39	FAR1 family protein