PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU23692.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26900.5 Da    PI: 9.4183
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU23692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.3e-212877149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i n+  r+vtfskRr g++KKA+EL++LC+ae+a+i+ s ++++l+++
  PHU23692.1 28 KPIANQNSRHVTFSKRRLGVFKKASELCILCGAEIAIIVQSlKRQRLFTF 77
                689*************************************9567889888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MNANNTDTVD SSAVPVKKTQ GRRKIVIKPI ANQNSRHVTF SKRRLGVFKK ASELCILCGA  60
EIAIIVQSLK RQRLFTFGHP SVDVIDRYLT GKSSSVNNHR FNFVQQNNEY YSQICRELDA  120
EKKNKEIIDE SKMVNGNNNG FWWNESIDNM GIEELDKFVD ALEELKKRVN MRVDVLKFRA  180
EVTGSREPPH ATLDLPLPIF TAGSSFSGRA KLFTEAFLLR DDTKSQGELN SEYLPNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-33M-type_MADS family protein