PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23820.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 193aa MW: 21284 Da PI: 8.1453

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	7.7e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C+++pyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ PHU23820.1 10 PCAACKFLRRKCLPGCIFSPYFPPEEPQKFINVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDAANA 108 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MASSSSYNSP CAACKFLRRK CLPGCIFSPY FPPEEPQKFI NVHKIFGASN VTKLLNELLP 60 HQREDAVNSL AYEAEARVRD PVYGCVGAIT FLQRQVERLQ KELDAANADL IRYACNEFTP 120 PPPPPPLPIH HNVALRQRPA EFSRRSSMGH GGGGGGFHQT PNFPMPYSLP NWNDHQNPSG 180 DHHYYGGGGG ASI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-73	LBD family protein