PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU23839.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 211aa    MW: 23427.9 Da    PI: 4.3854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU23839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.21.1e-0877859127
         NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kg.rapkgektdWvmheyr 127
                 y  ++ ++ +++++++ r+  +g W+ + +  +++++ +g++vg ++  ++  kg ++++++ t+W+m ey 
  PHU23839.1   7 YLITPLKNPNKSDQKHARTCGNGAWRGQTSAVPIKNRkGGSVVGYRRNYIYTsKGsKTSSSVTTNWLMSEYF 78 
                 55566666777889999999**************99867888*********954446777889********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MCDKSGYLIT PLKNPNKSDQ KHARTCGNGA WRGQTSAVPI KNRKGGSVVG YRRNYIYTSK  60
GSKTSSSVTT NWLMSEYFVG DDFFKANNIP KQDYALCRIK KHLRGKKDDD DDDAVNMEED  120
DALETIQGML LEPDSTCCTT QEVAEETDQW ESIINEVCDE KIDGVENTTA LVHGEYDLRG  180
CGEIRDVQED GVDGIGSNGI WEAINGILND V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-06NAC family protein