PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24026.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 398aa MW: 43179.3 Da PI: 8.2421

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.3	2.2e-16	172	218	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq PHU24026.1 172 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 218 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MHGLGGILSI SQAKQTLGRA GDTLESIVHQ ATHHGQNQDS LQNYDQNDQD LKFRMCSGGK 60 WGESSQHMAP PQATVLAKKR MRPSESDPQY GGAEDHGYTE RSACASASAT FCRENDTTMV 120 TWPSFDESSR SIKSKTACDE DSACHGGGSE NKEEEHETKR SNSSRRSRAA AVHNQSERRR 180 RDRINQRMKA LQRLVPNASK TDKASMLDEV IDYLKQLQAQ VQFMSSSARN LAPQMMMPLG 240 MHQHIQMSLL ARMGVGVGLG MGMGMFDMTA LARAAAAAAA ATTTPQSLTT HPLIHPNQMT 300 APTNIPFIPP GAFALPAAPA TIPSATQANT VVRATTVSPA ATSTTTNPSP FTNPYSAYLP 360 QSMDMEYFNN MAALYRQQLA NQSTQITGSK LNQGDQTE

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MHGLGGILSI SQAKQTLGRA GDTLESIVHQ ATHHGQNQDS LQNYDQNDQD LKFRMCSGGK  60
WGESSQHMAP PQATVLAKKR MRPSESDPQY GGAEDHGYTE RSACASASAT FCRENDTTMV  120
TWPSFDESSR SIKSKTACDE DSACHGGGSE NKEEEHETKR SNSSRRSRAA AVHNQSERRR  180
RDRINQRMKA LQRLVPNASK TDKASMLDEV IDYLKQLQAQ VQFMSSSARN LAPQMMMPLG  240
MHQHIQMSLL ARMGVGVGLG MGMGMFDMTA LARAAAAAAA ATTTPQSLTT HPLIHPNQMT  300
APTNIPFIPP GAFALPAAPA TIPSATQANT VVRATTVSPA ATSTTTNPSP FTNPYSAYLP  360
QSMDMEYFNN MAALYRQQLA NQSTQITGSK LNQGDQTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-28	bHLH family protein