PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24216.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-X1

Protein Properties

Length: 1138aa MW: 123358 Da PI: 8.1995

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.4	4.6e-06	337	355	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+k+CH GpC+ C+ PHU24216.1 337 CGRHRCEKTCHVGPCGHCQ 355 ******************7 PP
2	zf-NF-X1	17.9	6.8e-06	459	476	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H C++ CH G+C pC PHU24216.1 459 CGVHLCEAVCHSGDCAPC 476 ****************** PP
3	zf-NF-X1	18.6	4.2e-06	555	573	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC PHU24216.1 555 CGQHSCESLCHSGHCPPCL 573 ******************6 PP
4	zf-NF-X1	17	1.3e-05	665	680	1	16
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H C ++CH+ pC+ PHU24216.1 665 CGLHACARTCHPSPCD 680 ***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence
MSFPAQNNRR NNNNNSNHRP GRDNNNNNNS NPVQGGGARR EWVARGSNVT NAVSFSPAPI 60 AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRG 120 RGREGYNNYQ ENRVERAVRG RVNEERVKDP NLPQLVQEIE EKLLKGNVEC MICYDMVRRS 180 AAMWSCSSCY SIFHLSCIKK WARAPTSVDT SADKNKGFNW RCPGCQSVQL TSSRDIRYVC 240 FCGKRQEPPS DLYLTPHSCG EPCGKKLEKE LPGDGLSEED LCPHVCVLQC HPGPCPPCKA 300 FAPARSCPCG KEVITTRCSD RKSVLTCGQQ CGKFLDCGRH RCEKTCHVGP CGHCQIVVNA 360 CCFCKKKTEA VLCGDMGVKG DIKMENGVFS CNSACENKLN CGNHICHELC HPGPCGDCAL 420 LPSKIKTCCC GKTRLEEERR SCLYPIPTCS KVCGKSLRCG VHLCEAVCHS GDCAPCLVPV 480 TQRCRCGSTS RTVECYKTQS EDEKFTCDRP CGQKKNCGRH RCSERCCPLS NPKNSITDGW 540 NPHFCSMPCE KKLRCGQHSC ESLCHSGHCP PCLETIFTDL TCACGRTSIP PPLPCGTPLP 600 SCQLPCSVSQ PCGHPPTHSC HFGDCLPCAV PVAKECVGGH VILRNIPCGS KDIRCNKICG 660 KTRQCGLHAC ARTCHPSPCD ATAGPSNGSR ASCGQTCGAP RRDCRHTCSA LCHPFSPCPD 720 VRCEFPVTIT CSCGRITANV PCDAGGQVVD HVFEASIIQK LPSPLQPIET NGKKVPLGQR 780 KLICDDECAK MEKKKVLSDA FGITPPNLEA LHFGENAAVC EVLGDLLRRD AKWVLSIEER 840 CKFLVLGRSR GGVNALKVHV FCPMSKEKRD AVRLIAARWK LSVNAAGWEP KRFIVIHVTP 900 KSKAPTRILG AKGCTVNNIA QPAVFDTPVD MDPRLVVALF DLPRDADISA LVLRFGGECE 960 LVWLNDKNAL AVFSDPARAA TAMRRLDQGS AYCGAAVVPQ SGVASTGAAA TNVWGVAGAV 1020 KDGGGVAALK GNPWKKAVVQ EPHLRESPWD AEEWSKNPND LAVAPSAWRV NEAPSTASSN 1080 RWSILEPEIT SSLPRASITM KEPISLPEGS GSVPSPKSQH VGVGDMADVV DDWDKAYD

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence

MSFPAQNNRR NNNNNSNHRP GRDNNNNNNS NPVQGGGARR EWVARGSNVT NAVSFSPAPI  60
AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRG  120
RGREGYNNYQ ENRVERAVRG RVNEERVKDP NLPQLVQEIE EKLLKGNVEC MICYDMVRRS  180
AAMWSCSSCY SIFHLSCIKK WARAPTSVDT SADKNKGFNW RCPGCQSVQL TSSRDIRYVC  240
FCGKRQEPPS DLYLTPHSCG EPCGKKLEKE LPGDGLSEED LCPHVCVLQC HPGPCPPCKA  300
FAPARSCPCG KEVITTRCSD RKSVLTCGQQ CGKFLDCGRH RCEKTCHVGP CGHCQIVVNA  360
CCFCKKKTEA VLCGDMGVKG DIKMENGVFS CNSACENKLN CGNHICHELC HPGPCGDCAL  420
LPSKIKTCCC GKTRLEEERR SCLYPIPTCS KVCGKSLRCG VHLCEAVCHS GDCAPCLVPV  480
TQRCRCGSTS RTVECYKTQS EDEKFTCDRP CGQKKNCGRH RCSERCCPLS NPKNSITDGW  540
NPHFCSMPCE KKLRCGQHSC ESLCHSGHCP PCLETIFTDL TCACGRTSIP PPLPCGTPLP  600
SCQLPCSVSQ PCGHPPTHSC HFGDCLPCAV PVAKECVGGH VILRNIPCGS KDIRCNKICG  660
KTRQCGLHAC ARTCHPSPCD ATAGPSNGSR ASCGQTCGAP RRDCRHTCSA LCHPFSPCPD  720
VRCEFPVTIT CSCGRITANV PCDAGGQVVD HVFEASIIQK LPSPLQPIET NGKKVPLGQR  780
KLICDDECAK MEKKKVLSDA FGITPPNLEA LHFGENAAVC EVLGDLLRRD AKWVLSIEER  840
CKFLVLGRSR GGVNALKVHV FCPMSKEKRD AVRLIAARWK LSVNAAGWEP KRFIVIHVTP  900
KSKAPTRILG AKGCTVNNIA QPAVFDTPVD MDPRLVVALF DLPRDADISA LVLRFGGECE  960
LVWLNDKNAL AVFSDPARAA TAMRRLDQGS AYCGAAVVPQ SGVASTGAAA TNVWGVAGAV  1020
KDGGGVAALK GNPWKKAVVQ EPHLRESPWD AEEWSKNPND LAVAPSAWRV NEAPSTASSN  1080
RWSILEPEIT SSLPRASITM KEPISLPEGS GSVPSPKSQH VGVGDMADVV DDWDKAYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	123	RERGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein