PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24283.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 994aa MW: 111344 Da PI: 8.3922

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.9e-07	295	392	1	47
TSSS-HHHHHHHHHHHHHTTTT...................................................-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................................tWktIartmgkgRtlkqcksr 43 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+sr PHU24283.1 295 RKDWSKEESENLAKGVKQQFQEmllqrsvnlpvnllsdedgcsresgdlddviasirdhkitpetmrsfipevNWDQVASMYLPGRSGGECQSR 388 788**************999******************************************************9888****** PP HHHH CS Myb_DNA-binding 44 wqky 47 w+++ PHU24283.1 389 WLNW 392 98 PP
2	Myb_DNA-binding	25.9	2.3e-08	402	444	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W E++ l+++v+q + +W Ia+ +g Rt+ qc s++q PHU24283.1 402 WDLSEEKNLLQVVQQKRMSNWVDIAASLGVSRTPFQCLSHYQR 444 9999*************************************96 PP
3	Myb_DNA-binding	43.1	9.6e-14	452	496	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg WT eEd +l av+ +G +W +a+ + gRt+ qc +rw k PHU24283.1 452 RGDWTDEEDSRLCAAVETFGESNWQVVASVIE-GRTGTQCSNRWIK 496 899***************************.*********87 PP
4	Myb_DNA-binding	38.9	1.9e-12	506	564	2	47
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqky 47 g+W+++Ed++l+ av ++ ++ Wk++a++++ gRt qc++rw + PHU24283.1 506 GKWSADEDKRLKVAVMLFYPKcwrnigqsvpwrtpVWKKVAQYVP-GRTHVQCRERWVNT 564 89***************99********************.*********987 PP
5	Myb_DNA-binding	51.6	2.2e-16	573	615	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l+ a++++G W+++a++++ Rt++qc+ rw + PHU24283.1 573 EWTEEEDLKLKSAINEHGYS-WSKVAACVP-SRTDNQCRRRWMVL 615 7***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MAFDSDDDDF SGTDSDEGFQ ADMEALKKAC LLSGKDADDL QPSSSSADGH VAGANDVTLS 60 DTDADEDEDD DFELVRSIQE RFALSTEVHD PISMKPLCSI LPPGSEGDED DDFETLRVIQ 120 RRFAAYGDDN GNGREESLFD KFEQISEECS NDVARSKNLT DGHDSDAETT AISVNSSRFP 180 KSAHAFVDAI KKNRACQKLI REKMMQTEAR LEELKKLKER VKILKSFQLT CKKKMGRALS 240 QKRDARVQLI SLPKQRFSAK LPGKKLSAIH SGPPENSHVA SFKEALTQFA VSLSRKDWSK 300 EESENLAKGV KQQFQEMLLQ RSVNLPVNLL SDEDGCSRES GDLDDVIASI RDHKITPETM 360 RSFIPEVNWD QVASMYLPGR SGGECQSRWL NWEDPLIKHE GWDLSEEKNL LQVVQQKRMS 420 NWVDIAASLG VSRTPFQCLS HYQRSLNASI IRGDWTDEED SRLCAAVETF GESNWQVVAS 480 VIEGRTGTQC SNRWIKSLHP ARRRCGKWSA DEDKRLKVAV MLFYPKCWRN IGQSVPWRTP 540 VWKKVAQYVP GRTHVQCRER WVNTLDPSLK LDEWTEEEDL KLKSAINEHG YSWSKVAACV 600 PSRTDNQCRR RWMVLFPDEV PMLKEAKKIR RDAFISNFVD REEERPALKP NDIVLAHKLS 660 KAGCETTSAN KKRKRRPRTA KDDKTPKCDA VREMEKQHSE GSEGPESSDL INNQESDKIL 720 DGEEAVEQGC NDARKNKRRS RRHPRNTKKV KPNDKVPEAS ASSAGESTVA DDNICKRRRT 780 SSLVKKKSRT IASASITVDS TIADGNSCKR RQRTSSQVKK KSSDKNARRL ETSAVPGTLG 840 GGTSGASVRH KLNKCNQLKN DDRSCVGNLP ETVGDCMTLA SFVRKSRAKG CSLSFTKVAR 900 LHPDKAQGKA MAGDHSSRSC ISGGHDETEK RTSQECTSSN QISGTEVGDD MPLSLFMGKV 960 KREKIEVGDD MPLAFFIGKV KRGQPSGAQD RKRK

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MAFDSDDDDF SGTDSDEGFQ ADMEALKKAC LLSGKDADDL QPSSSSADGH VAGANDVTLS  60
DTDADEDEDD DFELVRSIQE RFALSTEVHD PISMKPLCSI LPPGSEGDED DDFETLRVIQ  120
RRFAAYGDDN GNGREESLFD KFEQISEECS NDVARSKNLT DGHDSDAETT AISVNSSRFP  180
KSAHAFVDAI KKNRACQKLI REKMMQTEAR LEELKKLKER VKILKSFQLT CKKKMGRALS  240
QKRDARVQLI SLPKQRFSAK LPGKKLSAIH SGPPENSHVA SFKEALTQFA VSLSRKDWSK  300
EESENLAKGV KQQFQEMLLQ RSVNLPVNLL SDEDGCSRES GDLDDVIASI RDHKITPETM  360
RSFIPEVNWD QVASMYLPGR SGGECQSRWL NWEDPLIKHE GWDLSEEKNL LQVVQQKRMS  420
NWVDIAASLG VSRTPFQCLS HYQRSLNASI IRGDWTDEED SRLCAAVETF GESNWQVVAS  480
VIEGRTGTQC SNRWIKSLHP ARRRCGKWSA DEDKRLKVAV MLFYPKCWRN IGQSVPWRTP  540
VWKKVAQYVP GRTHVQCRER WVNTLDPSLK LDEWTEEEDL KLKSAINEHG YSWSKVAACV  600
PSRTDNQCRR RWMVLFPDEV PMLKEAKKIR RDAFISNFVD REEERPALKP NDIVLAHKLS  660
KAGCETTSAN KKRKRRPRTA KDDKTPKCDA VREMEKQHSE GSEGPESSDL INNQESDKIL  720
DGEEAVEQGC NDARKNKRRS RRHPRNTKKV KPNDKVPEAS ASSAGESTVA DDNICKRRRT  780
SSLVKKKSRT IASASITVDS TIADGNSCKR RQRTSSQVKK KSSDKNARRL ETSAVPGTLG  840
GGTSGASVRH KLNKCNQLKN DDRSCVGNLP ETVGDCMTLA SFVRKSRAKG CSLSFTKVAR  900
LHPDKAQGKA MAGDHSSRSC ISGGHDETEK RTSQECTSSN QISGTEVGDD MPLSLFMGKV  960
KREKIEVGDD MPLAFFIGKV KRGQPSGAQD RKRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	671	676	KKRKRR
2	672	677	KRKRRP
3	734	742	RKNKRRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-162	MYB family protein