PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24326.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 787aa MW: 87030.7 Da PI: 5.1799

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.8	5.2e-09	393	436	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v PHU24326.1 393 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 436 578*****************************667888888876 PP
2	CCT	66.7	6.4e-23	728	771	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PHU24326.1 728 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 771 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MLAKSVIEPC IASDSCLSYL LYRLPWDSKI SEIAFRFRVN VSDLLAANSI DLNQPNQILP 60 EKSFVKVPVS CSCVDGIRRS LSTHYTIGAT DTLMSISEVY GGLVSAEQIR SANGIDAQHT 120 LASGQSLAIP LPCTCFNNSN NGAASVYMSY VVQGGDALTR IAAEYDVTIS NLENINGLGQ 180 SQIYPGDILA IPLASCSSAN LNWYNESLIV PNGSYALTAN NCIKCGCRPT DLSLDCSPSE 240 IVDKCSHLQC KNSNLFIGER HENHTTSGCN VTACIYRGHL GGKIFRSLVN STDVKCLGNQ 300 NQLAGSSMES PTSSYIAPYL SPSPLLSPSQ YSHSAKTHSL GVLLNSSYAN RHSDGLSDGY 360 GSEPSELRSP SNFDNDTSRS ESKTANAIGG KTARACDSCL SKRARWFCPA DDAFLCQSCD 420 VSVHSANQLA SRHERVRLET SSNKSTVTKF VDQTHQPCWH QGFTRKARTP RNGKKAQIGR 480 GKKAEENRVP EIGSEENSPD ENEFENEEQL LYQVPVFDSF EAELCTVPDE TATITDHLDM 540 LLNGEDACDD LNLPEFLSSD IELAEFAADV ESLLGEEDQE RTRLSNDAVE DNKSIKIEVE 600 DEEMREAVAC HLDPELDMAR EALNWNFDEY YEETVEQKVL PAAAAATTEF VTSEEYSGSS 660 KADEKGRLLL RLNHEAVISA WPNQSSPWTN GIRPHFNPDH DYWPDFLETS GDHQGYYGGH 720 VRSGDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRLKGRFVKR TSSSFSTPGF 780 PYLMNKR

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MLAKSVIEPC IASDSCLSYL LYRLPWDSKI SEIAFRFRVN VSDLLAANSI DLNQPNQILP  60
EKSFVKVPVS CSCVDGIRRS LSTHYTIGAT DTLMSISEVY GGLVSAEQIR SANGIDAQHT  120
LASGQSLAIP LPCTCFNNSN NGAASVYMSY VVQGGDALTR IAAEYDVTIS NLENINGLGQ  180
SQIYPGDILA IPLASCSSAN LNWYNESLIV PNGSYALTAN NCIKCGCRPT DLSLDCSPSE  240
IVDKCSHLQC KNSNLFIGER HENHTTSGCN VTACIYRGHL GGKIFRSLVN STDVKCLGNQ  300
NQLAGSSMES PTSSYIAPYL SPSPLLSPSQ YSHSAKTHSL GVLLNSSYAN RHSDGLSDGY  360
GSEPSELRSP SNFDNDTSRS ESKTANAIGG KTARACDSCL SKRARWFCPA DDAFLCQSCD  420
VSVHSANQLA SRHERVRLET SSNKSTVTKF VDQTHQPCWH QGFTRKARTP RNGKKAQIGR  480
GKKAEENRVP EIGSEENSPD ENEFENEEQL LYQVPVFDSF EAELCTVPDE TATITDHLDM  540
LLNGEDACDD LNLPEFLSSD IELAEFAADV ESLLGEEDQE RTRLSNDAVE DNKSIKIEVE  600
DEEMREAVAC HLDPELDMAR EALNWNFDEY YEETVEQKVL PAAAAATTEF VTSEEYSGSS  660
KADEKGRLLL RLNHEAVISA WPNQSSPWTN GIRPHFNPDH DYWPDFLETS GDHQGYYGGH  720
VRSGDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRLKGRFVKR TSSSFSTPGF  780
PYLMNKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	739	755	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-89	CO-like family protein